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<article xmlns:mml="http://www.w3.org/1998/Math/MathML" xmlns:xlink="http://www.w3.org/1999/xlink" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xmlns:ali="http://www.niso.org/schemas/ali/1.0/" article-type="research-article" dtd-version="1.2" xml:lang="en"><front><journal-meta><journal-id journal-id-type="publisher-id">Combinatorial Chemistry &amp; High Throughput Screening</journal-id><journal-title-group><journal-title xml:lang="en">Combinatorial Chemistry &amp; High Throughput Screening</journal-title><trans-title-group xml:lang="ru"><trans-title>Combinatorial Chemistry &amp; High Throughput Screening</trans-title></trans-title-group></journal-title-group><issn publication-format="print">1386-2073</issn><issn publication-format="electronic">1875-5402</issn><publisher><publisher-name xml:lang="en">Bentham Science</publisher-name></publisher></journal-meta><article-meta><article-id pub-id-type="publisher-id">644529</article-id><article-id pub-id-type="doi">10.2174/0113862073259714231012070100</article-id><article-categories><subj-group subj-group-type="toc-heading"><subject>Chemistry</subject></subj-group><subj-group subj-group-type="article-type"><subject>Research Article</subject></subj-group></article-categories><title-group><article-title xml:lang="en">Network Pharmacology Studies on the Molecular Mechanism of Hashimoto's Thyroiditis Treated with Shutiao Qiji Decoction</article-title></title-group><contrib-group><contrib contrib-type="author"><name><surname>Guo</surname><given-names>Shuang</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Lv</surname><given-names>Yan</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Shen</surname><given-names>Junyu</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff2"/></contrib><contrib contrib-type="author"><name><surname>Li</surname><given-names>Rong</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff1"/></contrib><contrib contrib-type="author"><name><surname>Liu</surname><given-names>Haipeng</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff3"/></contrib><contrib contrib-type="author"><name><surname>Fan</surname><given-names>Yuan</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff4"/></contrib><contrib contrib-type="author"><name><surname>Tian</surname><given-names>Chunhong</given-names></name><email>info@benthamscience.net</email><xref ref-type="aff" rid="aff5"/></contrib></contrib-group><aff id="aff1"><institution>College of Traditional Chinese Medicine, Yunnan University of Traditional Chinese Medicine</institution></aff><aff id="aff2"><institution>College of Traditional Chinese Medicine, Nanjing University of Chinese Medicine</institution></aff><aff id="aff3"><institution>The Second Affiliated Hospital, Yunnan University of Traditional Chinese Medicine</institution></aff><aff id="aff4"><institution>College of Traditional Chinese Medicine, Yunnan University of Traditional Chinese Medicine,</institution></aff><aff id="aff5"><institution>, Yunnan Research Institute of Traditional Chinese Medicine</institution></aff><pub-date date-type="pub" iso-8601-date="2024-10-01" publication-format="electronic"><day>01</day><month>10</month><year>2024</year></pub-date><volume>27</volume><issue>19</issue><issue-title xml:lang="ru"/><fpage>2899</fpage><lpage>2911</lpage><history><date date-type="received" iso-8601-date="2025-01-07"><day>07</day><month>01</month><year>2025</year></date></history><permissions><copyright-statement xml:lang="en">Copyright ©; 2024, Bentham Science Publishers</copyright-statement><copyright-year>2024</copyright-year><copyright-holder xml:lang="en">Bentham Science Publishers</copyright-holder><ali:free_to_read xmlns:ali="http://www.niso.org/schemas/ali/1.0/"/></permissions><self-uri xlink:href="https://rjpbr.com/1386-2073/article/view/644529">https://rjpbr.com/1386-2073/article/view/644529</self-uri><abstract xml:lang="en"><p id="idm46041443797024">Background:In recent years, the number of patients with Hashimoto's thyroiditis has been increasing, and traditional Chinese medicine ingredients and combinations have been applied to treat Hashimoto's thyroiditis to increase efficacy and reduce side effects during the treatment process.</p><p id="idm46041443801024">Objective:Shutiao Qiji Decoction is one of the Chinese traditional medicine prescriptions, which is commonly used to treat cancer, tumor, etc. It is also used for thyroid-related diseases in the clinic. Hashimotos thyroiditis is an autoimmune disease. In this study, the mechanism of Shutiao Qiji Decoction in treating Hashimoto's thyroiditis was studied through network pharmacology and molecular docking verification.</p><p id="idm46041443804992">Method:Each Chinese medicine ingredient of Shutiao Qiji Decoction was retrieved from the Traditional Chinese Medicine Systems Pharmacology (TCMSP) database. The related genes of HT were searched from the UniProt and GeneCards databases. Meanwhile, we used Cytoscape to construct the protein-protein interaction (PPI) visual network analysis, and used the search tool to search the database of Interacting Genes (STRING) to build a PPI network. These key proteins were enriched and analyzed by molecular docking validation, Gene Ontology (GO), and the Kyoto Encyclopedia of Genes and Genomes (KEGG). Hashimoto's thyroiditis disease model was established in SD rats, and SQD was administered by gavage after the successful establishment of the model. After 6 weeks of continuous administration of the drug by gavage, tissue samples were collected and the thyroid and spleen tissues were visualized by HE staining to verify the therapeutic effect.</p><p id="idm46041443810048">Results:The results showed that there were 287 TCM active ingredients, 1920 HT-related disease targets, and 176 drug and disease targets in SQD. Through PPI analysis, GP analysis, and KEGG analysis of the common targets of drugs and diseases, we found their pathways of action to be mainly cancer action pathway, PI3K-AKT signaling pathway, and T-cell action pathway. The active ingredients of the drugs in SQD, malvidin, stigmasterol, porin-5-en-3bta-ol, and chrysanthemum stigmasterol, were docked with the related target proteins, MAPK, GSK3β, TSHR, and NOTCH molecules. The best binding energies obtained from docking were mairin with TSHR, stigmasterol with TSHR, poriferast-5-en-3beta-ol with MAPK, and chryseriol with GSK3β, with binding energies of -6.84 kcal/mol, -6.53 kcal/mol, -5.03 kcal/mol, and -5.05 kcal/mol, respectively. HE staining sections of rat thyroid and spleen tissues showed that SQD had a therapeutic effect on Hashimoto's thyroiditis and restored its immune function.</p><p id="idm46041443819424">Conclusion:It is verified by molecular docking results that Shutiao Qiji Decoction has a potential therapeutic effect on Hashimoto's thyroiditis in the MAPK/TSHR/NOTCH signal pathway, and that the main components, mairin, stigmasterol, poriferast-5-en-3beta-ol, and chryseriol play a role in it. SQD has been shown to have a good therapeutic effect on Hashimoto's thyroiditis.</p></abstract><kwd-group xml:lang="en"><kwd>Shutiao Qiji Decoction</kwd><kwd>Hashimoto&amp;amp</kwd><kwd>rsquo</kwd><kwd>s thyroiditis</kwd><kwd>network pharmacology</kwd><kwd>molecular docking</kwd><kwd>pathology</kwd><kwd>TCMSP.</kwd></kwd-group></article-meta></front><body></body><back><ref-list><ref id="B1"><label>1.</label><mixed-citation>Jin, B.; Wang, S.; Fan, Z. Pathogenesis markers of hashimotos disease-a mini review. Frontiers in Bioscience-Landmark, 2022, 27(10), 297. doi: 10.31083/j.fbl2710297 PMID: 36336870</mixed-citation></ref><ref id="B2"><label>2.</label><mixed-citation>Mincer, D.L.; Jialal, I. Hashimoto Thyroiditis. In: In: StatPearls; StatPearls Publishing: Treasure Island, FL, 2022.</mixed-citation></ref><ref id="B3"><label>3.</label><mixed-citation>Weetman, A.P. An update on the pathogenesis of Hashimotos thyroiditis. J. Endocrinol. 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