Detection of new phylogenetic lineages in the korean field mouse in the south of Sikhote-Alin based on analysis of the cytochrome b gene variability

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The variability of the cytochrome b gene in 11 individuals of Korean field mouse from the Ussuri Nature Reserve, located on the southern spurs of the Sikhote-Alin in the Przewalski Mountains, was analyzed. In the population, a high level of genetic diversity was identified due to the discovery of individuals with haplotypes of three phylogenetic lineages “Amur”, “Korea” and “Manchuria”. The majority of individuals (72.73%) in the population had “Amur” haplotypes. A significantly lower frequency of occurrence of individuals with “Korea” haplotypes in the Ussuri Nature Reserve (9.09%) compared to the previously analyzed population of the Khasansky District (38.46%) located in the very south of the Primorsky Krai was noted. In the Ussuri Nature Reserve, for the first time in the Russian Far East, two individuals with “Manchuria” haplotypes were discovered. Previously, only one finding of an individual with a similar haplotype was noted in the literature in the Heilongjiang province of Northeast China. It has been suggested that individuals with haplotypes of the “Korea” phylogroup penetrate into the south of Sikhote-Alin from South Korea, and with haplotypes of the “Manchuria” phylogroup from Northeast China.

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作者简介

V. Tsukanova

Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far East Branch Russia Academy of Sciences

Email: sheremet76@yandex.ru
俄罗斯联邦, Vladivostok, 690022

I. Sheremetyeva

Federal Scientific Center of the East Asia Terrestrial Biodiversity, Far East Branch Russia Academy of Sciences

编辑信件的主要联系方式.
Email: sheremet76@yandex.ru
俄罗斯联邦, Vladivostok, 690022

参考

  1. Serizawa K., Suzuki H., Iwasa M. et al. A spatial aspect on mitochondrial DNA genealogy in Apodemus peninsulae from East Asia // Biochem. Genet. 2002. № 40. P. 149–161. doi: 10.1023/a:1015841424598
  2. Sakka H., Quere J.P., Kartavtseva I.V. et al. Comparative phylogeography of four Apodemus species (Mammalia: Rodentia) in the Asian Far East: Evidence of Quaternary climatic changes in their genetic structure // Biol. J. Linnean Society. 2010. V. 100. P. 797–821. doi: 10.1111/j.1095-8312.2010.01477.x
  3. Bayarlkhagva D., Tumendemberel O., Damdin B. Mitochondrial cytochrome b gene study of Apodemus peninsulae in Mongolia // Int. J. Curr. Res. 2013. V. 5. № 12. P. 3892–3896. doi: 10.13140/RG.2.2.24365.31200
  4. Шереметьева И.Н., Цуканова В.Д., Тимофеева Д.М. и др. Новые данные по распределению основных филогенетических линий восточноазиатской мыши Apodemus peninsulae на востоке России // Региональные проблемы. 2020. Т. 23. № 3. С. 10–20. doi: 10.31433/2618-9593-2020-23-3-10-20
  5. Kim H.R., Park Y.C. Genetic isolation of Korean populations of Apodemus peninsulae (Rodentia: Muridae) from their neighboring populations // Genes & Genomics. 2015. V. 37. № 12. P. 999–1005. doi: 10.1007/s13258-015-0331-0
  6. Цуканова В.Д., Шереметьева И.Н., Малыгин В.М. Изменчивость гена cyt b у восточноазиатской мыши Apodemus peninsulae Thomas, 1906 – природного носителя хантавируса AMRV в Хасанском районе Приморского края // Амурский зоол. журн. 2024. № 1. С. 56–64. https://www.doi.org/10.33910/2686-9519-2024-16-1-56-64
  7. Aljanabi S.M., Martinez I. Universal and rapid salt extraction of high quality genomic DNA for PCRbased techniques // Nucl. Aci. Res. 1997. V. 25. № 22. P. 4692–4693. doi: 10.1093/nar/25.22.4692
  8. Hall T.A. BioEdit: A user-friendly biological sequence alignment editor and analysis program for Windows 95/98 // Nucl. Аci. Symp. Series. 1999. V. 41. № 41. P. 95–98. doi: 10.1021/bk-1999-0734.ch008
  9. Kumar S., Stecher G., Li M. et al. MEGA X: Molecular еvolutionary genetics аnalysis across computing platforms // Mol. Biol. Evol. 2018. V. 35. № 6. P. 1547–1549. doi: 10.1093/molbev/msy096
  10. Liu X., Wei F., Li M. et al. Molecular phylogeny and taxonomy of wood mice (genus Apodemus Kaup, 1829) based on complete mtDNA cytochrome b sequences, with emphasis on Chinese species // Mol. Phylogenet. Evol. 2004. V. 33. № 1. P. 1–15. doi: 10.1016/j.ympev.2004.05.011
  11. Liu S.Y., He K., Chen S.D. et al. How many species of Apodemus and Rattus occur in China? A survey based on mitochondrial cyt b and morphological analyses // Zool. Res. 2018. V. 39. № 5. P. 309–320. doi: 10.24272/j.issn.2095-8137.2018.053
  12. Hasegawa M., Kishino H., Yano T. Dating of the human-ape splitting by a molecular clock of mitochondrial DNA // J. Mol. Evol. 1985. № 22. P. 160–174. doi: 10.1007/BF02101694
  13. Bandelt H.J., Forster P., Röhl A. Median-Joining networks for inferring intraspecific phylogenies // Mol. Biol. Evol. 1999. V. 16. № 1. P. 37–48. doi: 10.1093/oxfordjournals.molbev.a026036

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2. Fig. 1. ML-dendrogram (a) and phylogenetic network of mtDNA cytochrome b haplotypes (b) of the East Asian mouse. Bootstrap supports calculated for 1000 repeats are indicated at branching nodes. Sample numbers from the Ussuri Reserve are shown in bold on the tree. The sizes of circles are proportional to the number of samples with a given haplotype. Numbers and risks on the branches of the network correspond to the number of nucleotide substitutions greater than two.

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